RAPID : research on automated plankton identification

Author Posting. © Oceanography Society, 2007. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 20, 2 (2007): 172-187.When Victor Hensen deployed the first true plankton1 net in 1887, he and his colleagues were attempting to answer three fundamental questions: What planktonic organisms are present in the ocean? How many of each type are present? How does the plankton’s composition change over time? Although answering these questions has remained a central goal of oceanographers, the sophisticated tools available to enumerate planktonic organisms today offer capabilities that Hensen probably could never have imagined.This material is based upon work supported by the National Science Foundation under Grants OCE-0325018, OCE-0324937, OCE-0325167 and OCE-9423471, and the European Union under grants Q5CR-2002-71699, MAS3-ct98-0188, and MAS2-ct92-0015

CIBERER : Spanish national network for research on rare diseases: A highly productive collaborative initiative

Altres ajuts: Instituto de Salud Carlos III (ISCIII); Ministerio de Ciencia e Innovación.CIBER (Center for Biomedical Network Research; Centro de Investigación Biomédica En Red) is a public national consortium created in 2006 under the umbrella of the Spanish National Institute of Health Carlos III (ISCIII). This innovative research structure comprises 11 different specific areas dedicated to the main public health priorities in the National Health System. CIBERER, the thematic area of CIBER focused on rare diseases (RDs) currently consists of 75 research groups belonging to universities, research centers, and hospitals of the entire country. CIBERER's mission is to be a center prioritizing and favoring collaboration and cooperation between biomedical and clinical research groups, with special emphasis on the aspects of genetic, molecular, biochemical, and cellular research of RDs. This research is the basis for providing new tools for the diagnosis and therapy of low-prevalence diseases, in line with the International Rare Diseases Research Consortium (IRDiRC) objectives, thus favoring translational research between the scientific environment of the laboratory and the clinical setting of health centers. In this article, we intend to review CIBERER's 15-year journey and summarize the main results obtained in terms of internationalization, scientific production, contributions toward the discovery of new therapies and novel genes associated to diseases, cooperation with patients' associations and many other topics related to RD research

Global lake responses to climate change

Climate change is one of the most severe threats to global lake ecosystems. Lake surface conditions, such as ice cover, surface temperature, evaporation and water level, respond dramatically to this threat, as observed in recent decades. In this Review, we discuss physical lake variables and their responses to climate change. Decreases in winter ice cover and increases in lake surface temperature modify lake mixing regimes and accelerate lake evaporation. Where not balanced by increased mean precipitation or inflow, higher evaporation rates will favour a decrease in lake level and surface water extent. Together with increases in extreme-precipitation events, these lake responses will impact lake ecosystems, changing water quantity and quality, food provisioning, recreational opportunities and transportation. Future research opportunities, including enhanced observation of lake variables from space (particularly for small water bodies), improved in situ lake monitoring and the development of advanced modelling techniques to predict lake processes, will improve our global understanding of lake responses to a changing climate

Effects of evolution on egg development time

Using a global data set on egg hatch times in zooplanktonic and nektonic ectotherms from marine waters, the combined effects of body size, temperature and life-history attributes on development times were examined. After correcting for mass and temperature the mean egg hatch times (from laying to hatching) were 20 times faster in some taxa than in others. Some of the divergence in hatch times can be accounted for by the disposition strategy of the eggs. Eggs that are protected after laying (e.g. carried by the female, or attached to a substrate or floating in clumped masses) take 3.3 times longer on average to develop to hatching than those spawned individually and freely into the pelagic environment (i.e. ‘unprotected’), and this difference is independent of egg size. Given that unprotected eggs typically have higher mortality rates, it is proposed that evolution has acted to shorten this vulnerable period. Not only do hatch times appear to diverge on the basis of egg protection strategy, but also a similar degree of separation was apparent in cell cycle duration (i.e. time from 2 to 4 cell stage). These results reinforce the importance of egg disposition on development rate processes and their evolution

Predation by calanoid copepods on the appendicularian Oikopleura

Appendicularians have some of the highest growth rates among metazoans but they are usually outnumbered by the slower growing copepods in mesozooplankton communities. We present experimental evidence that the eggs and juveniles of the appendicularian Oikopleura dioica are actively consumed by various copepod species. Clearance rates of Calanus helgolandicus, Candacia armata, Centropages typicus, Eucalanus crassus, and Temora longicornis on eggs of O. dioica were usually above 300 ml copepod-1 d-1. The ingestion rates of C. helgolandicus on O. dioica eggs did not reach saturation even at the highest egg concentrations (4,560 eggs L-1). Although C. helgolandicus, C. typicus, and C. armata preyed actively on 1-mm-long O. dioica (approximately 0.2 mm in trunk length), predatory pressure decreased with increasing appendicularian size. We suggest that the association of dense appendicularian populations with phytoplankton blooms could be explained by their opportunistic response to beneficial conditions before copepod densities become high enough to cause a decline in appendicularian populations due to predation. Our results indicate that, in addition to the direct shunt of biomass from picoplankton to fish, appendicularians can occupy a similar role to that of microzooplankton in the ocean. They represent an intermediate step in the less efficient, picoplankton�appendicularia�copepod-fish food chain

Data compilation of marine pelagic organism biomasses, swimming velocities, clearance and respiration rates

Jellyfishes have functionally replaced several overexploited commercial stocks of planktivorous fishes. This is paradoxical, because they use a primitive prey capture mechanism requiring direct contact with the prey, whereas fishes use more efficient visual detection. We have compiled published data to show that, in spite of their primitive life-style, jellyfishes exhibit similar instantaneous prey clearance and respiration rates as their fish competitors and similar potential for growth and reproduction. To achieve this production, they have evolved large, water-laden bodies that increase prey contact rates. Although larger bodies are less efficient for swimming, optimization analysis reveals that large collectors are advantageous if they move through the water sufficiently slowly